Max-Planck-Institut für biologische Intelligenz

Publikationen der Abteilung "Gene - Schaltkreise - Verhalten"

Zeitschriftenartikel (85)

2025

Zeitschriftenartikel

Bakker, S.; ten Donkelaar, H. J.; Voogd, J.; Nicholson, C.; Bannister, L. H.; Medina, L.; Desfilis, E.; Wullimann, M. F.; Meek, J.; Puelles, L. et al.; Broere, C. A. J.; Turner, R.; Cerliani, L.; Glasser, M. F.: Rudolf Nieuwenhuys (11 June 1927 – 4 November 2024): A scholarly life. Brain Structure & Function 230 (6), 90 (2025)

MPG.PuRe

Zeitschriftenartikel

Kawashima, T.; Wei, Z.; Haruvi, R.; Shainer, I.; Narayan, S.; Baier, H.; Ahrens, M. B.: Voltage imaging reveals circuit computations in the raphe underlying serotonin-mediated motor vigor learning. Neuron 113 (2025)

MPG.PuRe

Zeitschriftenartikel

Mearns, D. S.; Hunt, S. A.; Schneider, M.; Parker, A. V.; Stemmer, M.; Baier, H.: Diverse prey capture strategies in teleost larvae. bioRxiv: the preprint server for biology (2025)

MPG.PuRe

Zeitschriftenartikel

Parker, A. V.; Stemmer, M.; Grätsch, S.; Dorigo, A.; Rodriguez Ramirez, O.; Adel, A.; Jordan, L. A.; Baier, H.: Intrinsic timing of brood care in shell-dwelling cichlids. Current Biology 35 (3), S. 672 - 680.e4 (2025)

MPG.PuRe

Zeitschriftenartikel

Shainer, I.; Kappel, J. M.; Laurell, E.; Donovan, J.; Schneider, M.; Kuehn, E.; Arnold-Ammer, I.; Stemmer, M.; Larsch, J.; Baier, H.: Transcriptomic neuron types vary topographically in function and morphology. Nature 638 (8052), S. 1023 - 1033 (2025)

MPG.PuRe

Zeitschriftenartikel

van Staden, C.; Finger-Baier, K.; Weinshenker, D.; Botha, T. L.; Brand, L.; Wolmarans, D. W.: The number of conspecific alarm substance donors notably influences the behavioural responses of zebrafish subjected to a traumatic stress procedure. Fish Physiology and Biochemistry 51 (2), 55 (2025)

MPG.PuRe

Zeitschriftenartikel

van Staden, C.; Weinshenker, D.; Finger-Baier, K.; Botha, T. L.; Brand, L.; de Wolmarans, W.: Posttraumatic anxiety-like behaviour in zebrafish is dose-dependently attenuated by the alpha-2A receptor agonist, guanfacine. Behavioural Pharmacology 36 (1), S. 47 - 59 (2025)

MPG.PuRe

Zeitschriftenartikel

Wang, Q.; Baier, H.: Eat, flee, freeze: Division of labor in the larval zebrafish visuomotor system. Proceedings of the National Academy of Sciences of the United States of America 122 (19), e2506018122 (2025)

MPG.PuRe

2024

Zeitschriftenartikel

Hellevik, A. M.; Mardoum, P.; Hahn, J.; Koelsch, Y.; D’Orazi, F. D.; Suzuki, S. C.; Godinho, L.; Lawrence, O.; Rieke, F.; Shekhar, K. et al.; Sanes, J. R.; Baier, H.; Baden, T.; Wong, R. O.; Yoshimatsu, T.: Ancient origin of the rod bipolar cell pathway in the vertebrate retina. Nature Ecology & Evolution 8 (6), S. 1165 - 1179 (2024)

MPG.PuRe

Zeitschriftenartikel

Huppertz, M.-C.; Wilhelm, J.; Grenier, V.; Schneider, M.; Falt, T.; Porzberg, N.; Hausmann, D.; Hoffmann, D. C.; Hai, L.; Tarnawski, M. et al.; Pino, G.; Slanchev, K.; Kolb, I.; Acuna, C.; Fenk, L. M.; Baier, H.; Hiblot, J.; Johnsson, K.: Recording physiological history of cells with chemical labeling. Science 383 (6685), S. 890 - 897 (2024)

MPG.PuRe

Zeitschriftenartikel

Smith, K.; Pilger, A.; Amorim, M. L. M.; Mircic, S.; Reining, Z.; Ristow, N.; Miller, D.; Leonhardt, A.; Donovan, J.; Meier, M. et al.; Marzullo, T. C.; Serbe-Kamp, E.; Steiner, A. P.; Gage, G. J.: Low-cost classroom and laboratory exercises for investigating both wave and event-related electroencephalogram potentials. Journal of undergraduate neuroscience education: JUNE: A publication of FUN, Faculty for Undergraduate Neuroscience 22 (3), S. A197 - A206 (2024)

MPG.PuRe

Zeitschriftenartikel

Sneddon, L. U.; Schroeder, P.; Roque, A.; Finger-Baier, K.; Fleming, A.; Tinman, S.; Collet, B.: Pain management in zebrafish: Report from a FELASA Working Group. Laboratory Animals 58 (3), S. 261 - 276 (2024)

MPG.PuRe

Zeitschriftenartikel

Wullimann, M. F.: Good heavens! Finally a landslide analysis of basal ganglia circuitry in teleosts. Cell Reports 43 (3), 113915 (2024)

MPG.PuRe

Zeitschriftenartikel

Wullimann, M. F.; Mokayes, N.; Shainer, I.; Kuehn, E.; Baier, H.: Genoarchitectonics of the larval zebrafish diencephalon. The Journal of Comparative Neurology 532 (3), e25549 (2024)

MPG.PuRe

Zeitschriftenartikel

Zaupa, M.; Nagaraj, N.; Sylenko, A.; Baier, H.; Sawamiphak, S.; Filosa, A.: The Calmodulin-interacting peptide Pcp4a regulates feeding state-dependent behavioral choice in zebrafish. Neuron 112 (7), S. 1150 - 1164.e6 (2024)

MPG.PuRe

2023

Zeitschriftenartikel

Hahn, J.; Monavarfeshani, A.; Qiao, M.; Kao, A.; Koelsch, Y.; Kumar, A.; Kunze, V. P.; Rasys, A. M.; Richardson, R.; Wekselblatt, J. B. et al.; Baier, H.; Lucas, R. J.; Li, W.; Meister, M.; Trachtenberg, J. T.; Yan, W.; Peng, Y.-R.; Sanes, J. R.; Shekhar, K.: Evolution of neuronal cell classes and types in the vertebrate retina. Nature 624 (7991), S. 415 - 424 (2023)

MPG.PuRe

Zeitschriftenartikel

Shainer, I.; Kuehn, E.; Laurell, E.; Al Kassar, M.; Mokayes, N.; Sherman, S.; Larsch, J.; Kunst, M.; Baier, H.: A single-cell resolution gene expression atlas of the larval zebrafish brain. Science Advances 9 (8), eade9909 (2023)

MPG.PuRe

Zeitschriftenartikel

Shainer, R.; Kram, V.; Kilts, T. M.; Li, L.; Doyle, A. D.; Shainer, I.; Martin, D.; Simon, C. G. J.; Zeng-Brouwers, J.; Schaefer, L. et al.; Young, M. F.: Biglycan regulates bone development and regeneration. Frontiers in Physiology 14, 1119368 (2023)

MPG.PuRe

Zeitschriftenartikel

Sherman, S.; Arnold-Ammer, I.; Schneider, M.; Kawakami, K.; Baier, H.: Retina-derived signals control pace of neurogenesis in visual brain areas but not circuit assembly. Nature Communications 14, 6020 (2023)

MPG.PuRe

Zeitschriftenartikel

van der Plas, T. L.; Tubiana, J.; Le Goc, G.; Migault, G.; Kunst, M.; Baier, H.; Bormuth, V.; Englitz, B.; Debrégeas, G.: Neural assemblies uncovered by generative modeling explain whole-brain activity statistics and reflect structural connectivity. eLife 12, e83139 (2023)

MPG.PuRe

Zeitschriftenartikel

van der Westhuizen, C.; Botha, T. L.; Finger-Baier, K.; de Brouwer, G.; Wolmarans, D. W.: Contingency learning in zebrafish exposed to apomorphine- and levetiracetam. Behavioural Pharmacology 34 (7), S. 424 - 436 (2023)

MPG.PuRe

2022

Zeitschriftenartikel

Bruckner, J. J.; Stednitz, S. J.; Grice, M. Z.; Zaidan, D.; Massaquoi, M. S.; Larsch, J.; Tallafuss, A.; Guillemin, K.; Washbourne, P.; Eisen, J. S.: The microbiota promotes social behavior by modulating microglial remodeling of forebrain neurons. PLoS Biology 20 (11), e3001838 (2022)

MPG.PuRe

Zeitschriftenartikel

Kappel, J. M.; Förster, D.; Slangewal, K.; Shainer, I.; Svara, F. N.; Donovan, J.; Sherman, S.; Januszewski, M.; Baier, H.; Larsch, J.: Visual recognition of social signals by a tectothalamic neural circuit. Nature 608 (7921), S. 146 - 152 (2022)

MPG.PuRe

Zeitschriftenartikel

Svara, F. N.; Förster, D.; Kubo, F.; Januszewski, M.; Dal Maschio, M.; Schubert, P. J.; Kornfeld, J.; Wanner, A. A.; Laurell, E.; Denk, W. et al.; Baier, H.: Automated synapse-level reconstruction of neural circuits in the larval zebrafish brain. Nature Methods 19 (11), S. 1357 - 1366 (2022)

MPG.PuRe

Zeitschriftenartikel

Tallafuss, A.; Stednitz, S. J.; Voeun, M.; Levichev, A.; Larsch, J.; Eisen, J.; Washbourne, P.: Egr1 is necessary for forebrain dopaminergic signaling during social behavior. eNeuro 9 (2), 0035-22.2022 (2022)

MPG.PuRe

Zeitschriftenartikel

Vettkötter, D.; Schneider, M.; Goulden, B. D.; Dill, H.; Liewald, J.; Zeiler, S.; Guldan, J.; Ateş, Y. A.; Watanabe, S.; Gottschalk, A.: Rapid and reversible optogenetic silencing of synaptic transmission by clustering of synaptic vesicles. Nature Communications 13, 7827 (2022)

MPG.PuRe

Zeitschriftenartikel

von Bernhardi, J. E.; Biechl, D.; Miek, L.; Herget, U.; Ryu, S.; Wullimann, M. F.: A versatile transcription factor: Multiple roles of orthopedia a (otpa) beyond its restricted localization in dopaminergic systems of developing and adult zebrafish (Danio rerio) brains. The Journal of Comparative Neurology 530 (14), S. 2537 - 2561 (2022)

MPG.PuRe

2021

Zeitschriftenartikel

Barker, A. J.; Helmbrecht, T. O.; Grob, A. A.; Baier, H.: Functional, molecular and morphological heterogeneity of superficial interneurons in the larval zebrafish tectum. The Journal of Comparative Neurology 529 (9), S. 2159 - 2175 (2021)

MPG.PuRe

Zeitschriftenartikel

Benito-Gutierrez, E.; Gattoni, G.; Stemmer, M.; Rohr, S. D.; Schuhmacher, L. N.; Tang, J.; Marconi, A.; Jekely, G.; Arendt, D.: The dorsoanterior brain of adult amphioxus shares similarities in expression profile and neuronal composition with the vertebrate telencephalon. BMC Biology 19 (1), 110 (2021)

MPG.PuRe

Zeitschriftenartikel

Fernandes, A. M.; Mearns, D. S.; Donovan, J. C.; Larsch, J.; Helmbrecht, T. O.; Koelsch, Y.; Laurell, E.; Kawakami, K.; Dal Maschio, M.; Baier, H.: Neural circuitry for stimulus selection in the zebrafish visual system. Neuron 109 (5), S. 805 - 822.e6 (2021)

MPG.PuRe

Zeitschriftenartikel

Fontinha, B. M.; Zekoll, T.; Al-Rawi, M.; Gallach, M.; Reithofer, F.; Barker, A. J.; Hofbauer, M.; Fischer, R. M.; von Haeseler, A.; Baier, H. et al.; Tessmar-Raible, K.: TMT-Opsins differentially modulate medaka brain function in a context-dependent manner. PLoS Biology 19 (1), S. 31 (2021)

MPG.PuRe

Zeitschriftenartikel

Koelsch, Y.; Hahn, J.; Sappington, A.; Stemmer, M.; Fernandes, A. M.; Helmbrecht, T. O.; Lele, S.; Butrus, S.; Laurell, E.; Arnold-Ammer, I. et al.; Shekhar, K.; Sanes, J. R.; Baier, H.: Molecular classification of zebrafish retinal ganglion cells links genes to cell types to behavior. Neuron 109 (4), S. 645 - 662.e9 (2021)

MPG.PuRe

Zeitschriftenartikel

Robles, E.; Fields, N. P.; Baier, H.: The zebrafish visual system transmits dimming information via multiple segregated pathways. The Journal of Comparative Neurology 529 (3), S. 539 - 552 (2021)

MPG.PuRe

Zeitschriftenartikel

Shainer, I.; Stemmer, M.: Choice of pre-processing pipeline influences clustering quality of scRNA-seq datasets. BMC Genomics 22 (1), 661 (2021)

MPG.PuRe

2020

Zeitschriftenartikel

Antinucci, P.; Dumitrescu, A.; Deleuze, C.; Morley, H. J.; Leung, K.; Hagley, T.; Kubo, F.; Baier, H.; Bianco, I. H.; Wyart, C.: A calibrated optogenetic toolbox of stable zebrafish opsin lines. eLife 9, e54937 (2020)

MPG.PuRe

publisher-version

Zeitschriftenartikel

DeMarco, E.; Xu, N.; Baier, H.; Robles, E.: Neuron types in the zebrafish optic tectum labeled by an id2b transgene. The Journal of Comparative Neurology 528 (7), S. 1173 - 1188 (2020)

MPG.PuRe

Zeitschriftenartikel

Förster, D.; Helmbrecht, T. O.; Mearns, D. S.; Jordan, L.; Mokayes, N.; Baier, H.: Retinotectal circuitry of larval zebrafish is adapted to detection and pursuit of prey. eLife 9, e58596 (2020)

MPG.PuRe

publisher-version

supplementary-material

Zeitschriftenartikel

Lempka, S. F.; Capogrosso, M.; Han, X.; Baier, H.; Waddell, S.; Chiel, H. J.; Ganguly, K.: What is the key conceptual or methodological bottleneck to controlling neural biology? Cell Systems 10 (6), S. 461 - 462 (2020)

MPG.PuRe

Zeitschriftenartikel

Mearns, D. S.; Donovan, J. C.; Fernandes, A. M.; Semmelhack, J. L.; Baier, H.: Deconstructing hunting behavior reveals a tightly coupled stimulus-response loop. Current Biology 30 (1), S. 54 - 69.e9 (2020)

MPG.PuRe

Zeitschriftenartikel

Pantoja, C.; Larsch, J.; Laurell, E.; Marquart, G.; Kunst, M.; Baier, H.: Rapid effects of selection on brain-wide activity and behavior. Current Biology 30 (18), S. 3647 - 3656.e3 (2020)

MPG.PuRe

Zeitschriftenartikel

van Staden, C.; de Brouwer, G.; Botha, T. L.; Finger-Baier, K.; Brand, S. J.; Wolmarans, D.: Dopaminergic and serotonergic modulation of social reward appraisal in zebrafish (Danio rerio) under circumstances of motivational conflict: Towards a screening test for anti-compulsive drug action. Behavioural Brain Research 379, 112393 (2020)

MPG.PuRe

Zeitschriftenartikel

Wu, Y.; Dal Maschio, M.; Kubo, F.; Baier, H.: An optical illusion pinpoints an essential circuit node for global motion processing. Neuron 108 (4), S. 722 - 734.e5 (2020)

MPG.PuRe

2019

Zeitschriftenartikel

Kramer, A.; Wu, Y.; Baier, H.; Kubo, F.: Neuronal architecture of a visual center that processes optic flow. Neuron 103 (1), S. 118 - 132.e7 (2019)

MPG.PuRe

publisher-version

supplementary-material

Zeitschriftenartikel

Kunst, M.; Laurell, E.; Mokayes, N.; Kramer, A.; Kubo, F.; Fernandes, A. M.; Förster, D.; Dal Maschio, M.; Baier, H.: A cellular-resolution atlas of the larval zebrafish brain. Neuron 103 (1), S. 21 - 38.e5 (2019)

MPG.PuRe

publisher-version

Zeitschriftenartikel

Larsch, J.; Pantoja, C.: Learning: Complexities of habituation in escaping zebrafish larvae. Current Biology 29 (8), S. R292 - R294 (2019)

MPG.PuRe

Zeitschriftenartikel

Marquart, G. D.; Tabor, K. M.; Bergeron, S. A.; Briggman, K. L.; Burgess, H. A.: Prepontine non-giant neurons drive flexible escape behavior in zebrafish. PLoS Biology 17 (10), e3000480 (2019)

MPG.PuRe

publisher-version

Zeitschriftenartikel

Shainer, I.; Michel, M.; Marquart, G. D.; Bhandiwad, A. A.; Zmora, N.; Livne, Z. B.-M.; Zohar, Y.; Hazak, A.; Mazon, Y.; Förster, D. et al.; Hollander-Cohen, L.; Cone, R. D.; Burgess, H. A.; Gothilf, Y.: Agouti-related protein 2 is a new player in the teleost stress response system. Current Biology 29 (12), S. 2009 - 2019.e7 (2019)

MPG.PuRe

Zeitschriftenartikel

Yashina, K.; Tejero-Cantero, A.; Herz, A.; Baier, H.: Zebrafish exploit visual cues and geometric relationships to form a spatial memory. iScience 19, S. 119 - 134 (2019)

MPG.PuRe

publisher-version

supplementary-material

2018

Zeitschriftenartikel

Bernal Sierra, Y. A.; Rost, B. R.; Pofahl, M.; Fernandes, A. M.; Kopton, R. A.; Moser, S.; Holtkamp, D.; Masala, N.; Beed, P.; Tukker, J. J. et al.; Oldani, S.; Boenigk, W.; Kohl, P.; Baier, H.; Schneider-Warme, F.; Hegemann, P.; Beck, H.; Seifert, R.; Schmitz, D.: Potassium channel-based optogenetic silencing. Nature Communications 9, 4611 (2018)

MPG.PuRe

publisher-version

supplementary-material

Zeitschriftenartikel

Förster, D.; Kramer, A.; Baier, H.; Kubo, F.: Optogenetic precision toolkit to reveal form, function and connectivity of single neurons. Methods 150, S. 42 - 48 (2018)

MPG.PuRe