Publications of the Institute

Scientific publications of the MPI for Biological Intelligence - starting in the year 2022.

Journal Article (105)

2024
Journal Article
Atluri, N.; Dulko, E.; Jedrusiak, M.; Klos, J.; Osuru, H. P.; Davis, E.; Beenhakker, M.; Kapur, J.; Zuo, Z.; Lunardi, N.: Anatomical substrates of Rapid Eye Movement sleep rebound in a rodent model of post-sevoflurane sleep disruption. Anesthesiology (2024)
Journal Article
Aulsebrook, A. E.; Jacques-Hamilton, R.; Kempenaers, B.: Quantifying mating behaviour using accelerometry and machine learning: Challenges and opportunities. Animal Behaviour 207, pp. 55 - 76 (2024)
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Bauer, J.; Lewin, U.; Herbert, E.; Gjorgjieva, J.; Schoonover, C.; Fink, A.; Rose, T.; Bonhoeffer, T.; Hübener, M.: Sensory experience steers representational drift in mouse visual cortex. bioRxiv: the preprint server for biology (2024)
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Borst, A.; Denk, W.: Efficient search for circuit structure by ‘Smooth-Index’ matrix-reordering. bioRxiv: the preprint server for biology (2024)
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Bulla, M.; Küpper, C.; Lank, D. B.; Albrechtová, J.; Loveland, J. L.; Martin, K.; Teltscher, K. L.; Cragnolini, M.; Lierz, M.; Albrecht, T. et al.; Forstmeier, W.; Kempenaers, B.: Sperm traits of the three genetic morphs in the ruff sandpiper. bioRxiv: the preprint server for biology (2024)
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Casagrande, S.; Dell'Omo, G.: Mitochondrial bioenergetics and proteomic insights in seabird nestling growth: Linking warmer nest temperatures to reduced body size. SSRN (2024)
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Castelfranco, A.; Alcami, P.: Mitochondria induce anisotropy and delays in action potential conduction. bioRxiv: the preprint server for biology (2024)
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Cimiotti, D. V.; Eberhart-Hertel, L. J.; Audevard, A.; Garcias Salas, P. J.; Gelinaud, G.; Günther, K.; Rocha, A.; Schulz, R.; van der Winden, J.; Schmaljohann, H. et al.; Küpper, C.: Dispersal in Kentish plovers (Charadrius alexandrinus): Adult females perform furthest movements. Journal of Ornithology (2024)
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Ding, W.; Weltzien, H.; Peters, C.; Klein, R.: Nausea-induced suppression of feeding is mediated by central amygdala Dlk1 expressing neurons. bioRxiv: the preprint server for biology (2024)
Journal Article
Dvoretskova, E.; Ho, M. C.; Kittke, V.; Neuhaus, F.; Vitali, I.; Lam, D. D.; Delgado, I.; Feng, C.; Torres, M.; Winkelmann, J. et al.; Mayer, C.: Spatial enhancer activation determines inhibitory neuron identity. bioRxiv: the preprint server for biology (2024)
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Fernholz, M. H. P.; Guggiana Nilo, D.; Bonhoeffer, T.; Kist, A. M.: DeepD3, an open framework for automated quantification of dendritic spines. bioRxiv: the preprint server for biology (2024)
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Goltstein, P.; Laubender, D.; Bonhoeffer, T.; Hübener, M.: Ocular dominance columns in mouse visual cortex. bioRxiv: the preprint server for biology (2024)
Journal Article
Gould, E.; Fraser, H. S.; Parker, T. H.; Nakagawa, S.; Griffith, S. C.; Vesk, P. A.; Fidler, F.; Hamilton, D. G.; Abbey-Lee, R. N.; Abbott, J. K. et al.; Aguirre, L. A.; Alcaraz, C.; Aloni, I.; Altschul, D.; Arekar, K.; Atkins, J. W.; Atkinson, J.; Baker, C.; Barrett, M.; Bell, K.; Bello, S. K.; Beltrán, I.; Berauer, B. J.; Bertram, M. G.; Billman, P. D.; Blake, C. K.; Blake, S.; Bliard, L.; Bonisoli-Alquati, A.; Bonnet, T.; Bordes, C. N. M.; Bose, A. P. H.; Botterill-James, T.; Boyd, M. A.; Boyle, S. A.; Bradfer-Lawrence, T.; Bradham, J.; Brand, J. A.; Brengdahl, M. I.; Bulla, M.; Bussière, L.; Camerlenghi, E.; Campbell, S. E.; Campos, L. L. F.; Caravaggi, A.; Cardoso, P.; Carroll, C. J. W.; Catanach, T. A.; Chen, X.; Chik, H. Y. J.; Choy, E. S.; Christie, A. P.; Chuang, A.; Chunco, A. J.; Clark, B. L.; Contina, A.; Covernton, G. A.; Cox, M. P.; Cressman, K. A.; Crotti, M.; Crouch, C. D.; D'Amelio, P.; de Sousa, A. A.; Döbert, T. F.; Dobler, R.; Dobson, A. J.; Doherty, T. S.; Drobniak, S. M.; Duffy, A. G.; Duncan, A. B.; Dunn, R. P.; Dunning, J.; Dutta, T.; Eberhart-Hertel, L. J.; Elmore, J. A.; Elsherif, M. M.; English, H. M.; Ensminger, D. C.; Ernst, U. R.; Ferguson, S. M.; Fernández-Juricic, E.; Ferreira-Arruda, T.; Fieberg, J.; Finch, E. A.; Fiorenza, E. A.; Fisher, D. N.; Fontaine, A.; Forstmeier, W.; Fourcade, Y.; Frank, G. S.; Freund, C. A.; Fuentes-Lillo, E.; Gandy, S. L.; Gannon, D. G.; García-Cervigón, A. I.; Garretson, A. C.; Ge, X.; Geary, W. L.; Géron, C.; Gilles, M.; Girndt, A.; Gliksman, D.; Goldspiel, H. B.; Gomes, D. G. E.; Good, M. K.; Goslee, S. C.; Gosnell, J. S.; Grames, E. M.; Gratton, P.; Grebe, N. M.; Greenler, S. M.; Griffioen, M.; Griffith, D. M.; Griffith, F. J.; Grossman, J. J.; Güncan, A.; Haesen, S.; Hagan, J. G.; Hager, H. A.; Harris, J. P.; Harrison, N. D.; Hasnain, S. S.; Havird, J. C.; Heaton, A. J.; Herrera-Chaustre, M. L.; Howard, T. J.; Hsu, B.-Y.; Iannarilli, F.; Iranzo, E. C.; Iverson, E. N. K.; Jimoh, S. O.; Johnson, D. H.; Johnsson, M.; Jorna, J.; Jucker, T.; Jung, M.; Kačergytė, I.; Kaltz, O.; Ke, A.; Kelly, C. D.; Keogan, K.; Keppeler, F. W.; Killion, A. K.; Kim, D.; Kochan, D. P.; Korsten, P.; Kothari, S.; Kuppler, J.; Kusch, J. M.; Lagisz, M.; Lalla, K. M.; Larkin, D. J.; Larson, C. L.; Lauck, K. S.; Lauterbur, M. E.; Law, A.; Léandri-Breton, D.-J.; Lembrechts, J. J.; L'Herpiniere, K.; Lievens, E. J. P.; de Lima, D. O.; Lindsay, S.; Luquet, M.; MacLeod, R.; Macphie, K. H.; Magellan, K.; Mair, M. M.; Malm, L. E.; Mammola, S.; Mandeville, C. P.; Manhart, M.; Manrique-Garzon, L. M.; Mäntylä, E.; Marchand, P.; Marshall, B. M.; Martin, C. A.; Martin, D. A.; Martin, J. M.; Martinig, A. R.; McCallum, E. S.; McCauley, M.; McNew, S. M.; Meiners, S. J.; Merkling, T.; Michelangeli, M.; Moiron, M.; Moreira, B.; Mortensen, J.; Mos, B.; Muraina, T. O.; Murphy, P. W.; Nelli, L.; Niemelä, P.; Nightingale, J.; Nilsonne, G.; Nolazco, S.; Nooten, S. S.; Novotny, J. L.; Olin, A. B.; Organ, C. L.; Ostevik, K. L.; Palacio, F. X.; Paquet, M.; Parker, D. J.; Pascall, D. J.; Pasquarella, V. J.; Paterson, J. H.; Payo-Payo, A.; Pedersen, K. M.; Perez, G.; Perry, K. I.; Pottier, P.; Proulx, M. J.; Proulx, R.; Pruett, J. L.; Ramananjato, V.; Randimbiarison, F. T.; Razafindratsima, O. H.; Rennison, D. J.; Riva, F.; Riyahi, S.; Roast, M. J.; Rocha, F. P.; Roche, D. G.; Román-Palacios, C.; Rosenberg, M. S.; Ross, J.; Rowland, F. E.; Rugemalila, D.; Russell, A. L.; Ruuskanen, S.; Saccone, P.; Sadeh, A.; Salazar, S. M.; Sales, K.; Salmón, P.; Sánchez-Tójar, A.; Santos, L. P.; Santostefano, F.; Schilling, H. T.; Schmidt, M.; Schmoll, T.; Schneider, A. C.; Schrock, A. E.; Schroeder, J.; Schtickzelle, N.; Schultz, N. L.; Scott, D. A.; Scroggie, M. P.; Shapiro, J. T.; Sharma, N.; Shearer, C. L.; Simón, D.; Sitvarin, M. I.; Skupien, F. L.; Slinn, H. L.; Smith, G. P.; Smith, J. A.; Sollmann, R.; Whitney, K. S.; Still, S. M.; Stuber, E. F.; Sutton, G. F.; Swallow, B.; Taff, C. C.; Takola, E.; Tanentzap, A. J.; Tarjuelo, R.; Telford, R. J.; Thawley, C. J.; Thierry, H.; Thomson, J.; Tidau, S.; Tompkins, E. M.; Tortorelli, C. M.; Trlica, A.; Turnell, B. R.; Urban, L.; de Vondel, S. V.; van der Wal, J. E. M.; Eeckhoven, J. V.; van Oordt, F.; Vanderwel, K. M.; Vanderwel, M. C.; Vanderwolf, K. J.; Vélez, J.; Vergara-Florez, D. C.; Verrelli, B. C.; Vieira, M. V.; Villamil, N.; Vitali, V.; Vollering, J.; Walker, J.; Walker, X. J.; Walter, J. A.; Waryszak, P.; Weaver, R. J.; Wedegärtner, R. E. M.; Weller, D. L.; Whelan, S.; White, R. L.; Wolfson, D. W.; Wood, A.; Yanco, S. W.; Yen, J. D. L.; Youngflesh, C.; Zilio, G.; Zimmer, C.; Zimmerman, G. M.; Zitomer, R. A.: Same data, different analysts: Variation in effect sizes due to analytical decisions in ecology and evolutionary biology. EcoEvoRxiv (2024)
Journal Article
Hees, J. T.; Harbauer, A. B.: Insulin signaling regulates Pink1 mRNA localization via modulation of AMPK activity to support PINK1 function in neurons. bioRxiv: the preprint server for biology (2024)
Journal Article
Hellevik, A. M.; Mardoum, P.; Hahn, J.; Koelsch, Y.; D’Orazi, F. D.; Suzuki, S. C.; Godinho, L.; Lawrence, O.; Rieke, F.; Shekhar, K. et al.; Sanes, J. R.; Baier, H.; Baden, T.; Wong, R. O.; Yoshimatsu, T.: Ancient origin of the rod bipolar cell pathway in the vertebrate retina. bioRxiv: the preprint server for biology (2024)
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Ko, M.-C.; Frankl-Vilches, C.; Bakker, A.; Sohnius-Wilhelmi, N.; Gahr, M.: Extensive, transient, and long-lasting gene regulation in a song-controlling brain area during testosterone-induced song development in adult female canaries. bioRxiv: the preprint server for biology (2024)
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Krentz, M.; Tutunji, R.; Kogias, N.; Murali Mahadevan, H.; Reppmann, Z. C.; Krause, F.; Hermans, E. J.: A comparison of fMRI data-derived and physiological data-derived methods for physiological noise correction. bioRxiv: the preprint server for biology (2024)
Journal Article
Krietsch, J.; Valcu, M.; Cragnolini, M.; Forstmeier, W.; Kempenaers, B.: Mutual mate guarding with limited sexual conflict in a sex-role-reversed shorebird. Behavioral Ecology 35 (1), arad084 (2024)
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Lim, H.; Zhang, Y.; Peters, C.; Straub, T.; Mayer, J. L.; Klein, R.: Genetically- and spatially-defined basolateral amygdala neurons control food consumption and social interaction. bioRxiv: the preprint server for biology (2024)
Journal Article
Madariaga, D.; Arro, D.; Irarrázaval, C.; Soto, A.; Guerra, F.; Romero, A.; Ovalle, F.; Fedrigolli, E.; DesRosiers, T.; Serbe-Kamp, E. et al.; Marzullo, T.: A library of electrophysiological responses in plants - A model of transversal education and Open Science. bioRxiv: the preprint server for biology (2024)
Journal Article
Mazengenya, P.; Lesku, J. A.; Rattenborg, N. C.; Manger, P. R.: Apparent absence of hypothalamic cholinergic neurons in the common ostrich and emu: Implications for global brain states during sleep. The Journal of Comparative Neurology 532 (2), e25587 (2024)
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Mearns, D. S.; Hunt, S. A.; Schneider, M.; Parker, A. V.; Stemmer, M.; Baier, H.: Diverse prey capture strategies in teleost larvae. bioRxiv: the preprint server for biology (2024)
Journal Article
Monte, A.; Leitao, A.; Frankl-Vilches, C.; da Matos, R. S.; Trappschuh, M.; da Silva, M. L.; Gahr, M.: Testosterone treatment unveils testosterone-insensitive song in an early-branched hummingbird. Ethology, Ecology & Evolution 36 (1), pp. 41 - 69 (2024)
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Myoga, M. H.; Amaro, D.; Kello, V.; Gumbert, M.; Leibold, C.; Pecka, M.; Grothe, B.: The dynamics of context-dependent space representations in auditory cortex. bioRxiv: the preprint server for biology (2024)
Journal Article
Parker, A. V.; Stemmer, M.; Grätsch, S.; Dorigo, A.; Rodriguez Ramirez, O.; Adel, A.; Jordan, L. A.; Baier, H.: Brood care in shell-dwelling cichlids is timed by independent maternal and larval clocks. bioRxiv: the preprint server for biology (2024)
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Policarpo, M.; Baldwin, M. W.; Casane, D.; Salzburger, W.: Diversity and evolution of the vertebrate chemoreceptor gene repertoire. Nature Communications 15, 1421 (2024)
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Prech, S.; Groschner, L. N.; Borst, A.: Super Bowl, an open platform for visual stimulation of insects. bioRxiv: the preprint server for biology (2024)
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Rattenborg, N. C.: Sleep is dangerous: Historic hunting targeting fur seals sleeping unihemispherically at sea. Sleep, zsae026 (2024)
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Schubert, P. J.; Saxena, R.; Kornfeld, J.: DeepFocus: Fast focus and astigmatism correction for electron microscopy. Nature Communications 15, 948 (2024)
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Segura, I.; Harbauer, A.: The role of mitochondrial RNA association for mitochondrial homeostasis in neurons. Biochemical Journal 481 (3), pp. 119 - 139 (2024)
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Shen, Y.-J.; Zaballa, S.; Bech, X.; Sancho-Balsells, A.; Díaz-Cifuentes, C.; Seyit-Bremer, G.; Ballasch, I.; Alcázar, N.; Alberch, J.; Abad, M. et al.; Serrano, M.; Klein, R.; Giralt, A.; del Toro, D.: Expansion of the neocortex and protection from neurodegeneration by in vivo transient reprogramming. bioRxiv: the preprint server for biology (2024)
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Taff, C. C.; Baldan, D.; Mentesana, L.; Ouyang, J. Q.; Vitousek, M. N.; Hau, M.: Endocrine flexibility can facilitate or constrain the ability to cope with global change. Philosophical Transactions of the Royal Society of London, Series B: Biological Sciences 379 (1898), 20220502 (2024)
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Thore, E. S. J.; Aulsebrook, A. E.; Brand, J. A.; Almeida, R. A.; Brodin, T.; Bertram, M. G.: Time is of the essence: The importance of considering biological rhythms in an increasingly polluted world. PLoS Biology 22 (1), e3002478 (2024)
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Ungurean, G.; Rattenborg, N. C.: A mammal and bird's-eye-view of the pupil during sleep and wakefulness. European Journal of Neuroscience: European Neuroscience Association 59 (4), pp. 584 - 594 (2024)
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Weiler, S.; Rahmati, V.; Isstas, M.; Wutke, J.; Stark, A. W.; Franke, C.; Geis, C.; Witte, O. W.; Hübener, M.; Bolz, J. et al.; Margrie, T. W.; Holthoff, K.; Teichert, M.: A primary sensory cortical interareal feedforward inhibitory circuit for tacto-visual integration. bioRxiv: the preprint server for biology (2024)
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Wullimann, M.; Mokayes, N.; Shainer, I.; Kuehn, E.; Baier, H.: Genoarchitectonics of the larval zebrafish diencephalon. The Journal of Comparative Neurology (2024)
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Zaid, E.; Rainsford, F. W.; Johnsson, R. D.; Valcu, M.; Vyssotski, A. L.; Meerlo, P.; Lesku, J. A.: Semelparous marsupials reduce sleep for sex. Current Biology 34 (3), pp. 606 - 614.e3 (2024)
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Zaupa, M.; Nagaraj, N.; Sylenko, A.; Baier, H.; Sawamiphak, S.; Filosa, A.: The Calmodulin-interacting peptide Pcp4a regulates feeding state-dependent behavioral choice in zebrafish. Neuron (2024)
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Zerche, M.; Hunniford, V.; Alekseev, A.; El May, F.; Vavakou, A.; Siegenthaler, D.; Hüser, M. A.; Kiehn, S. M.; Garrido-Charles, A.; Alvanos, T. et al.; Witzke, I.; Trenholm, S.; Macé, E.; Kusch, K.; Bruegmann, T.; Wolf, B. J.; Mager, T.; Moser, T.: Efficient and sustained optogenetic control of nervous and cardiac systems. bioRxiv: the preprint server for biology (2024)
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Zhang, J.; Santema, P.; Wang, H.; Lin, Z.; Yang, L.; Yan, D.; Li, J.; Deng, W.; Kempenaers, B.: The risk of brood parasitism does not affect levels of extrapair paternity in a cuckoo host. Behavioral Ecology 35 (1), arad111 (2024)
2023
Journal Article
Ammer, G.; Serbe-Kamp, E.; Mauss, A.; Richter, F. G.; Fendl, S.; Borst, A.: Multilevel visual motion opponency in Drosophila. Nature Neuroscience 26, pp. 1894 - 1905 (2023)
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Borst, A.; Groschner, L. N.: How flies see motion. Annual Review of Neuroscience 46, pp. 17 - 37 (2023)
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Borst, A.; Leibold, C.: Connecting connectomes to physiology. The Journal of Neuroscience 43 (20), pp. 3599 - 3610 (2023)
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Braun, A.; Borst, A.; Meier, M.: Disynaptic inhibition shapes tuning of OFF motion detectors in Drosophila. Current Biology 33 (11), pp. 2260 - 2269.e4 (2023)
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Casagrande, S.; Dzialo, M.; Trost, L.; Malkoc, K.; Sadowska, E. T.; Hau, M.; Pierce, B.; McWilliams, S.; Bauchinger, U.: Mitochondrial metabolism in blood more reliably predicts whole-animal energy needs compared to other tissues. iScience 26 (12), 108321 (2023)
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Casagrande, S.; Loveland, J. L.; Oefele, M.; Boner, W.; Lupi, S.; Stier, A.; Hau, M.: Dietary nucleotides can prevent glucocorticoid-induced telomere attrition in a fast-growing wild vertebrate. Molecular Ecology 32 (19), pp. 5429 - 5447 (2023)
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Casal Moura, M.; Thompson, G. E.; Nelson, D. R.; Fussner, L. A.; Hummel, A. M.; Jenne, D. E.; Emerling, D.; Fervenza, F. C.; Kallenberg, C. G. M.; Langford, C. A. et al.; McCune, W. J.; Merkel, P. A.; Monach, P. A.; Seo, P.; Spiera, R. F.; St. Clair, E. W.; Ytterberg, S. R.; Stone, J. H.; Robinson, W. H.; Specks, U.: Activation of a latent epitope causing differential binding of anti-neutrophil cytoplasmic antibodies to proteinase 3. Arthritis and Rheumatology 75 (5), pp. 748 - 759 (2023)
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Chisholm, R. A.; Kristensen, N. P.; Rheindt, F. E.; Chong, K. Y.; Ascher, J. S.; Lim, K. K. P.; Ng, P. K. L.; Yeo, D. C. J.; Meier, R.; Tan, H. H. et al.; Giam, X.; Yeoh, Y. S.; Seah, W. W.; Berman, L. M.; Tan, H. Z.; Sadanandan, K. R.; Theng, M.; Jusoh, W. F. A.; Jain, A.; Huertas, B.; Tan, D. J. X.; Ng, A. C. R.; Teo, A.; Yiwen, Z.; Cho, T. J. Y.; Sin, Y. C. K.: Two centuries of biodiversity discovery and loss in Singapore. Proceedings of the National Academy of Sciences of the United States of America 120 (51), e2309034120 (2023)
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Costalunga, G.; Sanchez Carpena, C.; Seltmann, S.; Benichov, J. I.; Vallentin, D.: Wild nightingales flexibly match whistle pitch in real time. Current Biology 33 (15), pp. 3169 - 3178.e3 (2023)
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Delhey, K.; Valcu, M.; Muck, C.; Dale, J.; Kempenaers, B.: Evolutionary predictors of the specific colors of birds. Proceedings of the National Academy of Sciences of the United States of America 120 (34), e2217692120 (2023)
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