Publications

2021

Journal Article

Brunner, C.; Grillet, M.; Urban, A.; Roska, B.; Montaldo, G.; Macé, E.: Whole-brain functional ultrasound imaging in awake head-fixed mice. Nature Protocols 16 (7), pp. 3547 - 3571 (2021)

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Claudi, F.; Tyson, A. L.; Petrucco, L.; Margrie, T. W.; Portugues, R.; Branco, T.: Visualizing anatomically registered data with brainrender. eLife 10, e65751 (2021)

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de Kock, C. P. J.; Pie, J.; Pieneman, A. W.; Mease, R. A.; Bast, A.; Guest, J. M.; Oberlaender, M.; Mansvelder, H. D.; Sakmann, B.: High-frequency burst spiking in layer 5 thick-tufted pyramids of rat primary somatosensory cortex encodes exploratory touch. Communications Biology 4 (1), 709 (2021)

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Dominguez, S.; Ma, L.; Yu, H.; Pouchelon, G.; Mayer, C.; Spyropoulos, G. D.; Cea, C.; Buzsaki, G.; Fishell, G.; Khodagholy, D. et al.; Gelinas, J. N.: A transient postnatal quiescent period precedes emergence of mature cortical dynamics. eLife 10, e69011 (2021)

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Fenk, L. M.; Kim, A. J.; Maimon, G.: Suppression of motion vision during course-changing, but not course-stabilizing, navigational turns. Current Biology 31 (20), pp. 4608 - 4619 (2021)

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Fernandes, A. M.; Mearns, D. S.; Donovan, J. C.; Larsch, J.; Helmbrecht, T. O.; Koelsch, Y.; Laurell, E.; Kawakami, K.; Dal Maschio, M.; Baier, H.: Neural circuitry for stimulus selection in the zebrafish visual system. Neuron 109 (5), pp. 805 - 822.e6 (2021)

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Fleitas, C.; Marfull-Oromi, P.; Chauhan, D.; del Toro, D.; Peguera, B.; Zammou, B.; Rocandio, D.; Klein, R.; Espinet, C.; Egea, J.: FLRT2 and FLRT3 cooperate in maintaining the tangential migratory streams of cortical interneurons during development. The Journal of Neuroscience 41 (35), pp. 7350 - 7362 (2021)

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Fontinha, B. M.; Zekoll, T.; Al-Rawi, M.; Gallach, M.; Reithofer, F.; Barker, A. J.; Hofbauer, M.; Fischer, R. M.; von Haeseler, A.; Baier, H. et al.; Tessmar-Raible, K.: TMT-Opsins differentially modulate medaka brain function in a context-dependent manner. PLoS Biology 19 (1), p. 31 (2021)

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Glas, A.: Join the Lone Kidney Club: Incentivising live organ donation. Journal of Medical Ethics 47 (9), pp. 618 - 622 (2021)

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Glas, A.; Hübener, M.; Bonhoeffer, T.; Goltstein, P. M.: Spaced training enhances memory and prefrontal ensemble stability in mice. Current Biology 31 (18), pp. 4052 - 4061.e6 (2021)

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Goltstein, P. M.; Reinert, S.; Bonhoeffer, T.; Hübener, M.: Mouse visual cortex areas represent perceptual and semantic features of learned visual categories. Nature Neuroscience 24 (10), pp. 1441 - 1451 (2021)

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Guggiana Nilo, D.; Riegler, C.; Hübener, M.; Engert, F.: Distributed chromatic processing at the interface between retina and brain in the larval zebrafish. Current Biology 31 (9), pp. 1945 - 1953.e5 (2021)

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Haimson, B.; Meir, O.; Sudakevitz-Merzbach, R.; Elberg, G.; Friedrich, S.; Lovell V, P.; Paixao, S.; Klein, R.; Mello V, C.; Klar, A.: Natural loss of function of ephrin-B3 shapes spinal flight circuitry in birds. Science Advances 7 (24), eabg5968 (2021)

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Herrera, K. J.; Panier, T.; Guggiana-Nilo, D.; Engert, F.: Larval zebrafish use olfactory detection of sodium and chloride to avoid salt water. Current Biology 31 (4), pp. 782 - 793.e3 (2021)

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Holtkamp, S. J.; Ince, L. M.; Barnoud, C.; Schmitt, M. T.; Sinturel, F.; Pilorz, V.; Pick, R.; Jemelin, S.; Muehlstaedt, M.; Boehncke, W.-H. et al.; Weber, J.; Laubender, D.; Philippou-Massier, J.; Chen, C.-S.; Holtermann, L.; Vestweber, D.; Sperandio, M.; Schraml, B. U.; Halin, C.; Dibner, C.; Oster, H.; Renkawitz, J.; Scheiermann, C.: Circadian clocks guide dendritic cells into skin lymphatics. Nature Immunology 22, pp. 1375 - 1381 (2021)

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Jafari, M.; Schumacher, A.-M.; Snaidero, N.; Ullrich Gavilanes, E. M.; Neziraj, T.; Kocsis-Jutka, V.; Engels, D.; Jürgens, T.; Wagner, I.; Weidinger, J. D. F. et al.; Schmidt, S. S.; Beltran, E.; Hagan, N.; Woodworth, L.; Ofengeim, D.; Gans, J.; Wolf, F.; Kreutzfeldt, M.; Portugues, R.; Merkler, D.; Misgeld, T.; Kerschensteiner, M.: Phagocyte-mediated synapse removal in cortical neuroinflammation is promoted by local calcium accumulation. Nature Neuroscience 24 (3), pp. 355 - 367 (2021)

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Klein, A. S.; Dolensek, N.; Weiand, C.; Gogolla, N.: Fear balance is maintained by bodily feedback to the insular cortex in mice. Science 374 (6570), pp. 1010 - 1015 (2021)

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Koelsch, Y.; Hahn, J.; Sappington, A.; Stemmer, M.; Fernandes, A. M.; Helmbrecht, T. O.; Lele, S.; Butrus, S.; Laurell, E.; Arnold-Ammer, I. et al.; Shekhar, K.; Sanes, J. R.; Baier, H.: Molecular classification of zebrafish retinal ganglion cells links genes to cell types to behavior. Neuron 109 (4), pp. 645 - 662.e9 (2021)

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Korzhova, V.; Marinkovic, P.; Njavro, J. R.; Goltstein, P. M.; Sun, F.; Tahirovic, S.; Herms, J.; Liebscher, S.: Long-term dynamics of aberrant neuronal activity in awake Alzheimer's disease transgenic mice. Communications Biology 4 (1), 1368 (2021)

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Leonte, M.-B.; Leonhardt, A.; Borst, A.; Mauss, A. S.: Aerial course stabilization is impaired in motion-blind flies. The Journal of Experimental Biology 224 (14), jeb242219 (2021)

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Li, Y.; Chen, P.-J.; Lin, T.-Y.; Ting, C.-Y.; Muthuirulan, P.; Pursley, R.; Ilic, M.; Pirih, P.; Drews, M. S.; Menon, K. P. et al.; Zinn, K. G.; Pohida, T.; Borst, A.; Lee, C.-H.: Neural mechanism of spatio-chromatic opponency in the Drosophila amacrine neurons. Current Biology 31 (14), pp. 3040 - 3052 (2021)

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Markov, D. A.; Petrucco, L.; Kist, A. M.; Portugues, R.: A cerebellar internal model calibrates a feedback controller involved in sensorimotor control. Nature Communications 12, 6694 (2021)

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Morrone, C.; Smirnova, N. F.; Jeridi, A.; Kneidinger, N.; Hollauer, C.; Schupp, J. C.; Kaminski, N.; Jenne, D. E.; Eickelberg, O.; Yildirim, A. O.: Cathepsin B promotes collagen biosynthesis, which drives bronchiolitis obliterans syndrome. European Respiratory Journal 57 (5), 2001416 (2021)

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Reinert, S.; Hübener, M.; Bonhoeffer, T.; Goltstein, P. M.: Mouse prefrontal cortex represents learned rules for categorization. Nature 593 (7859), pp. 411 - 417 (2021)

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Robinson, R. A.; Griffiths, S. C.; van de Haar, L. L.; Malinauskas, T.; van Battum, E. Y.; Zelina, P.; Schwab, R. A.; Karia, D.; Malinauskaite, L.; Brignani, S. et al.; van den Munkhof, M. H.; Dudukcu, O.; De Ruiter, A. A.; Van den Heuvel, D. M. A.; Bishop, B.; Elegheert, J.; Aricescu, A. R.; Pasterkamp, R. J.; Siebold, C.: Simultaneous binding of guidance cues NET1 and RGM blocks extracellular NEO1 signaling. Cell 184 (8), pp. 2103 - 2120.e31 (2021)

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Robles, E.; Fields, N. P.; Baier, H.: The zebrafish visual system transmits dimming information via multiple segregated pathways. The Journal of Comparative Neurology 529 (3), pp. 539 - 552 (2021)

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Ruff, T.; Peters, C.; Matsumoto, A.; Ihle, S. J.; Morales, P. A.; Gaitanos, L.; Yonehara, K.; del Toro, D.; Klein, R.: FLRT3 marks direction-selective retinal ganglion cells that project to the medial terminal nucleus. Frontiers in Molecular Neuroscience 14, 790466 (2021)

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Schoeps, B.; Eckfeld, C.; Prokopchuk, O.; Boettcher, J.; Haeussler, D.; Steiger, K.; Demir, I. E.; Knolle, P.; Soehnlein, O.; Jenne, D. E. et al.; Hermann, C. D.; Krueger, A.: TIMP1 triggers neutrophil extracellular trap formation in pancreatic cancer. Cancer Research 81 (13), pp. 3568 - 3579 (2021)

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Seren, S.; Derian, L.; Keles, I.; Guillon, A.; Lesner, A.; Gonzalez, L.; Baranek, T.; Si-Tahar, M.; Marchand-Adam, S.; Jenne, D. E. et al.; Paget, C.; Jouan, Y.; Korkmaz, B.: Proteinase release from activated neutrophils in mechanically ventilated patients with non-COVID-19 and COVID-19 pneumonia. European Respiratory Journal 57 (4), 2003755 (2021)

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Shainer, I.; Stemmer, M.: Choice of pre-processing pipeline influences clustering quality of scRNA-seq datasets. BMC Genomics 22 (1), 661 (2021)

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Shin, J.; Serbe, E.; Gage, G. J.: Authentic research investigations of a controversial question: Can plants learn? American Biology Teacher 83 (4), pp. 222 - 228 (2021)

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Trinkaus, V. A.; Riera Tur, I.; Martinez-Sanchez, A.; Bauerlein, F. J. B.; Guo, Q.; Arzberger, T.; Baumeister, W.; Dudanova, I.; Hipp, M. S.; Hartl, F. U. et al.; Fernandez-Busnadiego, R.: In situ architecture of neuronal α-Synuclein inclusions. Nature Communications 12, 2110 (2021)

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Valera, G.; Markov, D. A.; Bijari, K.; Randlett, O.; Asgharsharghi, A.; Baudoin, J.-P.; Ascoli, G. A.; Portugues, R.; Lopez-Schier, H.: A neuronal blueprint for directional mechanosensation in larval zebrafish. Current Biology 31 (7), pp. 1463 - 1475.e6 (2021)

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Villalobos, K.; Štih, V.; Ahmadinejad, A.; Sundaram, S.; Dozier, J.; Francl, A.; Azevedo, F.; Sasaki, T.; Boix, X.: Do neural networks for segmentation understand insideness? Neural Computation 33 (9), pp. 2511 - 2549 (2021)

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Wang, S.; Segev, I.; Borst, A.; Palmer, S.: Maximally efficient prediction in the early fly visual system may support evasive flight maneuvers. PLoS Computational Biology 17 (5), e1008965 (2021)

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Yuste-Checa, P.; Trinkaus, V. A.; Riera Tur, I.; Imamoglu, R.; Schaller, T. F.; Wang, H.; Dudanova, I.; Hipp, M. S.; Bracher, A.; Hartl, F. U.: The extracellular chaperone Clusterin enhances Tau aggregate seeding in a cellular model. Nature Communications 12, 4863 (2021)

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Zocher, S.; Overall, R. W.; Berdugo-Vega, G.; Rund, N.; Karasinsky, A.; Adusumilli, V. S.; Steinhauer, C.; Scheibenstock, S.; Handler, K.; Schultze, J. L. et al.; Calegari, F.; Kempermann, G.: De novo DNA methylation controls neuronal maturation during adult hippocampal neurogenesis. The EMBO Journal 40 (18), e107100 (2021)

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2020

Journal Article

Abbott, L. F.; Bock, D. D.; Callaway, E. M.; Denk, W.; Dulac, C.; Fairhall, A. L.; Fiete, I.; Harris, K. M.; Helmstaedter, M.; Jain, V. et al.; Kasthuri, N.; LeCun, Y.; Lichtman, J. W.; Littlewood, P. B.; Luo, L.; Maunsell, J. H. R.; Reid, R. C.; Rosen, B. R.; Rubin, G. M.; Sejnowski, T. J.; Seung, H. S.; Svoboda, K.; Tank, D. W.; Tsao, D.; Van Essen, D. C.: The mind of a mouse. Cell 182 (6), pp. 1372 - 1376 (2020)

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Antinucci, P.; Dumitrescu, A.; Deleuze, C.; Morley, H. J.; Leung, K.; Hagley, T.; Kubo, F.; Baier, H.; Bianco, I. H.; Wyart, C.: A calibrated optogenetic toolbox of stable zebrafish opsin lines. eLife 9, e54937 (2020)

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Barykina, N. V.; Sotskov, V. P.; Gruzdeva, A. M.; Wu, Y. K.; Portugues, R.; Subach, O. M.; Chefanova, E. S.; Plusnin, V. V.; Ivashkina, O. I.; Anokhin, K. V. et al.; Vlaskina, A. V.; Korzhenevskiy, D. A.; Nikolaeva, A. Y.; Boyko, K. M.; Rakitina, T. V.; Varizhuk, A. M.; Pozmogova, G. E.; Subach, F. V.: FGCaMP7, an improved version of fungi-based ratiometric calcium indicator for in vivo visualization of neuronal activity. International Journal of Molecular Sciences 21 (8), 3012 (2020)

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ZIP

Journal Article

Blumenreich, S.; Barav, O. B.; Jenkins, B. J.; Futerman, A. H.: Lysosomal storage disorders shed light on lysosomal dysfunction in Parkinson's disease. International Journal of Molecular Sciences 21 (14), 4966 (2020)

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Blumenstock, S.; Dudanova, I.: Cortical and striatal circuits in Huntington's disease. Frontiers in Neuroscience 14, 82 (2020)

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Borst, A.; Drews, M.; Meier, M.: The neural network behind the eyes of a fly. Current Opinion in Physiology 16, pp. 33 - 42 (2020)

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Borst, A.; Haag, J.; Mauss, A. S.: How fly neurons compute the direction of visual motion. Journal of Comparative Physiology A-Neuroethology Sensory Neural and Behavioral Physiology 206, pp. 109 - 124 (2020)

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Brunner, C.; Grillet, M.; Sans-Dublanc, A.; Farrow, K.; Lambert, T.; Macé, E.; Montaldo, G.; Urban, A.: A platform for brain-wide volumetric functional ultrasound imaging and analysis of circuit dynamics in awake mice. Neuron 108 (5), pp. 861 - 875.e7 (2020)

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Claudi, F.; Petrucco, L.; Tyson, A. L.; Branco, T.; Margrie, T. W.; Portugues, R.: BrainGlobe Atlas API: A common interface for neuroanatomical atlases. The Journal of Open Source Software 5 (54), 2668 (2020)

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del Toro, D.; Carrasquero-Ordaz, M. A.; Chu, A.; Ruff, T.; Shahin, M.; Jackson, V. A.; Chavent, M.; Berbeira-Santana, M.; Seyit-Bremer, G.; Brignani, S. et al.; Kaufmann, R.; Lowe, E.; Klein, R.; Seiradake, E.: Structural basis of Teneurin-Latrophilin interaction in repulsive guidance of migrating neurons. Cell 180 (2), pp. 323 - 339.e19 (2020)

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DeMarco, E.; Xu, N.; Baier, H.; Robles, E.: Neuron types in the zebrafish optic tectum labeled by an id2b transgene. The Journal of Comparative Neurology 528 (7), pp. 1173 - 1188 (2020)

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Dolensek, N.; Gehrlach, D. A.; Klein, A. S.; Gogolla, N.: Facial expressions of emotion states and their neuronal correlates in mice. Science 368 (6486), pp. 89 - 94 (2020)

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Dragomir, E. I.; Štih, V.; Portugues, R.: Evidence accumulation during a sensorimotor decision task revealed by whole-brain imaging. Nature Neuroscience 23 (1), pp. 85 - 93 (2020)

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Journal Article (1280)